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Research

Collection Management Systems (TDWG 2020 Symposium)

TDWG 2020 Challenges of alignment of collection management sys. across globe & diff. domains - SYM04 - YouTube

隨筆紀錄一下TDWG 2020關於自然史典藏系統的討論(線上),已經是4年前的討論了,有的似乎也沒有在維護了,仍有參考價值。

RECODE

Vince Smith

英國自然史提出的解決方案,完整的data model,滿強調Linked Data,很有啟發性。

多人協作? recode::community curation

NHM data workflow recode::collection object

NHM與世界的連結 recode::collection object

RECODE Data Model的關鍵: CollectionObject recode::collection object

Kotka

芬蘭的自然史典藏系統,強調Simple and Flexible,不用關聯式資料庫,很像新創邊移動邊開槍的模式。

Mikko Heikkinen

Collection Management System | Suomen Lajitietokeskus

  • focus on 80/20-rule, flexibility and simplicity
  • not focus on comprehensive data model (denormalized data)

沒有好用的系統、又有開發的人,所以就可以自幹 kotka::Background

跨組織要使用,要讓系統簡單而保持彈性。因為非技術的問題就夠麻煩的了。 kotka::Simple and Flexible

Symbiota

去中心化系統很厲害,但感覺要花很多精力處理系統之間的同步,不知道是不是美國這種人多地大物博的才運作的起來?

Edward Gilbert

  • decentralized data network (isolated decentralized network of mini-aggregators)
  • live-managed Vs. snapshot

Specify

新版(Specify 7)轉移到網頁,很大的破壞式更新。

  • Community-Driven decision making

DINA

不知道是不是沒繼續了,感覺沒有很活躍?

DIgital Information system for NAtural history data)

DINA: Open Source and Open Services - A Modern Approach for Sustainable Natural History Collection Management Systems

  • web-based modules, throuth API, components can be modified or replaced by other components

Meeting In-Between: Moving beyond the buzz, bottlenecks, and bubble to collaboratively develop digitization tooling

很讚的總結,但我暫時無法吸收了。

Matt Yoder

  • Digital Specimens in TaxonWorks
Name start mantance status tech stack stats
RECODE 2022 NHM good model concept
Kotka 2012 Finnish Museum of Natural History Luomus PHP, Zend 2020: 2.5 million specimens,12 institutions
Symbiota 2008 Arizona State University PHP 2020:50-60 public portals
Specify Specify Collections Consortium
DINA 2014 RBGE? not available (2024) web

Research of Digitizing Herbarium

Case1: Oklahoma State Universaty Herbarium

Search portal (Symbiota)

Select dataset: okla-symbiota-filter1.png

Filter by taxon: okla-symbiota-filter2.png

Other Filters: okla-symbiota-filter3.png

Filter results: okla-symbiota-filter-result.png

Species page: okla-symbiota-species.png

Specimen page: okla-symbiota-specimen.png

Digitizing Process

Imaging: okla-imaging.png

Transcription from label and image information by volunteering and student worker

upload images to Notes from Nature — Zooniverse for volunteers to help transcribe.

ref: Digitizing Herbariums for Future Historians - YouTube

Case2: University of Alaska Herbarium (ALA)

ArctosDB